HL_1NJM_059

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

1NJM|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_059 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.371

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

1NJM|1|0|C|2506
1NJM|1|0|U|2507
1NJM|1|0|G|2508
1NJM|1|0|A|2509
1NJM|1|0|A|2510
1NJM|1|0|G|2511
1NJM|1|0|A|2512
1NJM|1|0|A|2513
1NJM|1|0|G|2514
1NJM|1|0|G|2515

Current chains

Chain 0

23S ribosomal RNA

Nearby chains