HL_1NJM_066

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

1NJM|1|0|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_066 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.153

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1NJM|1|0|G|2794
1NJM|1|0|A|2795
1NJM|1|0|A|2796
1NJM|1|0|G|2797
1NJM|1|0|A|2798
1NJM|1|0|C|2799
1NJM|1|0|C|2800
1NJM|1|0|A|2801
1NJM|1|0|C|2802

Current chains

Chain 0

23S ribosomal RNA

Nearby chains