HL_1NJM_080

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

1NJM|1|0|U|1409, 1NJM|1|0|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_080 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.3982

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|G|1402
1NJM|1|0|U|1403
1NJM|1|0|C|1404
1NJM|1|0|A|1405
1NJM|1|0|A|1406
1NJM|1|0|G|1407
1NJM|1|0|A|1408
1NJM|1|0|U|1409
1NJM|1|0|U|1410
1NJM|1|0|C|1411

Current chains

Chain 0

23S ribosomal RNA

Nearby chains