HL_1NJN_012

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1NJN|1|0|G|399, 1NJN|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4593

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1NJN|1|0|G|395
1NJN|1|0|U|396
1NJN|1|0|U|397
1NJN|1|0|C|398
1NJN|1|0|G|399
1NJN|1|0|U|400
1NJN|1|0|G|401
1NJN|1|0|A|402
1NJN|1|0|A|403
1NJN|1|0|A|404
1NJN|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains