HL_1NJN_039

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1NJN|1|0|A|1630, 1NJN|1|0|A|1632, 1NJN|1|0|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_039 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1744

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

1NJN|1|0|C|1628
1NJN|1|0|G|1629
1NJN|1|0|A|1630
1NJN|1|0|C|1631
1NJN|1|0|A|1632
1NJN|1|0|C|1633
1NJN|1|0|A|1634
1NJN|1|0|G|1635

Current chains

Chain 0

23S ribosomal RNA

Nearby chains