HL_1NJN_054

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_054 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.2288

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

1NJN|1|0|C|2303
1NJN|1|0|G|2304
1NJN|1|0|C|2305
1NJN|1|0|A|2306
1NJN|1|0|A|2307
1NJN|1|0|A|2308
1NJN|1|0|G|2309
1NJN|1|0|G|2310

Current chains

Chain 0

23S ribosomal RNA

Nearby chains