HL_1NJN_072

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AAGCUAUGGCUAUGCU

Length

16 nucleotides

Bulged bases

1NJN|1|0|A|1468, 1NJN|1|0|U|1469, 1NJN|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|A|1463
1NJN|1|0|A|1464
1NJN|1|0|G|1465
1NJN|1|0|C|1466
1NJN|1|0|U|1467
1NJN|1|0|A|1468
1NJN|1|0|U|1469
1NJN|1|0|G|1470
1NJN|1|0|G|1471
1NJN|1|0|C|1472
1NJN|1|0|U|1473
1NJN|1|0|A|1474
1NJN|1|0|U|1475
1NJN|1|0|G|1476
1NJN|1|0|C|1477
1NJN|1|0|U|1478

Current chains

Chain 0

23S ribosomal RNA

Nearby chains