HL_1NJN_073

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

1NJN|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJN_073 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.2143

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1NJN|1|0|U|2507
1NJN|1|0|G|2508
1NJN|1|0|A|2509
1NJN|1|0|A|2510
1NJN|1|0|G|2511
1NJN|1|0|A|2512
1NJN|1|0|A|2513
1NJN|1|0|G|2514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains