HL_1NJO_003

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

1NJO|1|0|A|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_003 not in the Motif Atlas

Homologous match to HL_7RQB_003

Geometric discrepancy: 0.2093

The information below is about HL_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

1NJO|1|0|G|121
1NJO|1|0|G|122
1NJO|1|0|A|123
1NJO|1|0|A|124
1NJO|1|0|A|125
1NJO|1|0|C|126

Current chains

Chain 0

23S ribosomal RNA

Nearby chains