HL_1NJO_017

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1NJO|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_017 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.1807

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1NJO|1|0|U|575
1NJO|1|0|A|576
1NJO|1|0|U|577
1NJO|1|0|U|578
1NJO|1|0|G|579
1NJO|1|0|A|580
1NJO|1|0|A|581
1NJO|1|0|G|582
1NJO|1|0|C|583
1NJO|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains