HL_1NJO_022

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1NJO|1|0|U|760, 1NJO|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.5078

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

1NJO|1|0|U|757
1NJO|1|0|G|758
1NJO|1|0|C|759
1NJO|1|0|U|760
1NJO|1|0|G|761
1NJO|1|0|A|762
1NJO|1|0|A|763
1NJO|1|0|A|764
1NJO|1|0|C|765
1NJO|1|0|A|766

Current chains

Chain 0

23S ribosomal RNA

Nearby chains