HL_1NJO_058

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJO_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.3514

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1NJO|1|0|A|2450
1NJO|1|0|G|2451
1NJO|1|0|U|2452
1NJO|1|0|C|2453
1NJO|1|0|C|2454
1NJO|1|0|A|2455
1NJO|1|0|U|2456
1NJO|1|0|A|2457
1NJO|1|0|U|2458

Current chains

Chain 0

23S ribosomal RNA

Nearby chains