HL_1NJP_007

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

1NJP|1|0|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.4345

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

1NJP|1|0|A|202
1NJP|1|0|G|203
1NJP|1|0|A|204
1NJP|1|0|A|205
1NJP|1|0|U|206
1NJP|1|0|U|207

Current chains

Chain 0

23S ribosomal RNA

Nearby chains