HL_1NJP_012

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1NJP|1|0|G|399, 1NJP|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.53

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1NJP|1|0|G|395
1NJP|1|0|U|396
1NJP|1|0|U|397
1NJP|1|0|C|398
1NJP|1|0|G|399
1NJP|1|0|U|400
1NJP|1|0|G|401
1NJP|1|0|A|402
1NJP|1|0|A|403
1NJP|1|0|A|404
1NJP|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains