HL_1NJP_022

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1NJP|1|0|U|760, 1NJP|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.5086

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

1NJP|1|0|U|757
1NJP|1|0|G|758
1NJP|1|0|C|759
1NJP|1|0|U|760
1NJP|1|0|G|761
1NJP|1|0|A|762
1NJP|1|0|A|763
1NJP|1|0|A|764
1NJP|1|0|C|765
1NJP|1|0|A|766

Current chains

Chain 0

23S ribosomal RNA

Nearby chains