HL_1NJP_024

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

1NJP|1|0|U|840, 1NJP|1|0|G|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_024 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.3263

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1NJP|1|0|U|839
1NJP|1|0|U|840
1NJP|1|0|G|841
1NJP|1|0|A|842
1NJP|1|0|G|843
1NJP|1|0|G|844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains