HL_1NJP_026

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

1NJP|1|0|C|968, 1NJP|1|0|U|969, 1NJP|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4138

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1NJP|1|0|A|966
1NJP|1|0|G|967
1NJP|1|0|C|968
1NJP|1|0|U|969
1NJP|1|0|A|970
1NJP|1|0|A|971
1NJP|1|0|C|972
1NJP|1|0|U|973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16