HL_1NJP_033

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1NJP|1|0|G|1338, 1NJP|1|0|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.3421

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1NJP|1|0|G|1337
1NJP|1|0|G|1338
1NJP|1|0|U|1339
1NJP|1|0|C|1340
1NJP|1|0|G|1341
1NJP|1|0|U|1342
1NJP|1|0|C|1343

Current chains

Chain 0

23S ribosomal RNA

Nearby chains