HL_1NJP_058

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.3514

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|A|2450
1NJP|1|0|G|2451
1NJP|1|0|U|2452
1NJP|1|0|C|2453
1NJP|1|0|C|2454
1NJP|1|0|A|2455
1NJP|1|0|U|2456
1NJP|1|0|A|2457
1NJP|1|0|U|2458

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain T

GENERAL STRESS PROTEIN CTC