HL_1NJP_059

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

1NJP|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_059 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3722

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

1NJP|1|0|C|2506
1NJP|1|0|U|2507
1NJP|1|0|G|2508
1NJP|1|0|A|2509
1NJP|1|0|A|2510
1NJP|1|0|G|2511
1NJP|1|0|A|2512
1NJP|1|0|A|2513
1NJP|1|0|G|2514
1NJP|1|0|G|2515

Current chains

Chain 0

23S ribosomal RNA

Nearby chains