HL_1NJP_061

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

1NJP|1|0|U|2575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_061 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.4572

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1NJP|1|0|C|2573
1NJP|1|0|G|2574
1NJP|1|0|U|2575
1NJP|1|0|G|2576
1NJP|1|0|A|2577
1NJP|1|0|G|2578

Current chains

Chain 0

23S ribosomal RNA

Nearby chains