HL_1NJP_071

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAAUAGG

Length

9 nucleotides

Bulged bases

1NJP|1|0|A|654, 1NJP|1|0|A|655, 1NJP|1|0|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|651
1NJP|1|0|C|652
1NJP|1|0|G|653
1NJP|1|0|A|654
1NJP|1|0|A|655
1NJP|1|0|U|656
1NJP|1|0|A|657
1NJP|1|0|G|658
1NJP|1|0|G|659

Current chains

Chain 0

23S ribosomal RNA

Nearby chains