HL_1NJP_073

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AAGCUAUGGCUAUGCU

Length

16 nucleotides

Bulged bases

1NJP|1|0|A|1468, 1NJP|1|0|U|1469, 1NJP|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|A|1463
1NJP|1|0|A|1464
1NJP|1|0|G|1465
1NJP|1|0|C|1466
1NJP|1|0|U|1467
1NJP|1|0|A|1468
1NJP|1|0|U|1469
1NJP|1|0|G|1470
1NJP|1|0|G|1471
1NJP|1|0|C|1472
1NJP|1|0|U|1473
1NJP|1|0|A|1474
1NJP|1|0|U|1475
1NJP|1|0|G|1476
1NJP|1|0|C|1477
1NJP|1|0|U|1478

Current chains

Chain 0

23S ribosomal RNA

Nearby chains