HL_1NJP_077

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_077 not in the Motif Atlas

Geometric match to HL_4V9F_075

Geometric discrepancy: 0.3937

The information below is about HL_4V9F_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|U|622
1NJP|1|0|G|623
1NJP|1|0|A|624
1NJP|1|0|A|625
1NJP|1|0|A|626
1NJP|1|0|A|627

Current chains

Chain 0

23S ribosomal RNA

Nearby chains