HL_1NJP_081

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1NJP|1|0|A|2013, 1NJP|1|0|A|2014, 1NJP|1|0|G|2015, 1NJP|1|0|U|2017, 1NJP|1|0|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_081 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3991

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

1NJP|1|0|G|2010
1NJP|1|0|U|2011
1NJP|1|0|A|2012
1NJP|1|0|A|2013
1NJP|1|0|A|2014
1NJP|1|0|G|2015
1NJP|1|0|A|2016
1NJP|1|0|U|2017
1NJP|1|0|G|2018
1NJP|1|0|C|2019

Current chains

Chain 0

23S ribosomal RNA

Nearby chains