HL_1OB5_008
3D structure
- PDB id
- 1OB5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 1OB5|1|F|A|38
- QA status
- Modified nucleotides: OMC, OMG, YG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1OB5_008 not in the Motif Atlas
- Homologous match to HL_5E6M_002
- Geometric discrepancy: 0.4549
- The information below is about HL_5E6M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55735.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1OB5|1|F|A|29
1OB5|1|F|G|30
1OB5|1|F|A|31
1OB5|1|F|OMC|32
1OB5|1|F|U|33
1OB5|1|F|OMG|34
1OB5|1|F|A|35
1OB5|1|F|A|36
1OB5|1|F|YG|37
1OB5|1|F|A|38
1OB5|1|F|PSU|39
1OB5|1|F|5MC|40
1OB5|1|F|U|41
Current chains
- Chain F
- TRANSFER-RNA, PHE
Nearby chains
- Chain A
- ELONGATION FACTOR TU
- Chain B
- Transfer RNA; tRNA
Coloring options: