HL_1OB5_009
3D structure
- PDB id
- 1OB5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CG(MAD)UCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, MAD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1OB5_009 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.2075
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
1OB5|1|F|G|53
1OB5|1|F|5MU|54
1OB5|1|F|PSU|55
1OB5|1|F|C|56
1OB5|1|F|G|57
1OB5|1|F|MAD|58
1OB5|1|F|U|59
1OB5|1|F|C|60
1OB5|1|F|C|61
Current chains
- Chain F
- TRANSFER-RNA, PHE
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain E
- ELONGATION FACTOR TU
Coloring options: