HL_1OB5_010

3D structure

PDB id

1OB5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

A(OMC)U(OMG)AA(YG)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, OMG, YG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OB5_010 not in the Motif Atlas

Homologous match to HL_5E81_235

Geometric discrepancy: 0.2291

The information below is about HL_5E81_235

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

1OB5|1|B|A|31
1OB5|1|B|OMC|32
1OB5|1|B|U|33
1OB5|1|B|OMG|34
1OB5|1|B|A|35
1OB5|1|B|A|36
1OB5|1|B|YG|37
1OB5|1|B|A|38
1OB5|1|B|PSU|39

Current chains

Chain B

TRANSFER-RNA, PHE

Nearby chains

Chain C

ELONGATION FACTOR TU

Chain D

Transfer RNA; tRNA