HL_1OND_017

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1OND|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_017 not in the Motif Atlas

Geometric match to HL_7A0S_018

Geometric discrepancy: 0.2464

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1OND|1|0|U|575
1OND|1|0|A|576
1OND|1|0|U|577
1OND|1|0|U|578
1OND|1|0|G|579
1OND|1|0|A|580
1OND|1|0|A|581
1OND|1|0|G|582
1OND|1|0|C|583
1OND|1|0|A|584

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains