HL_1OND_025

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

1OND|1|0|C|968, 1OND|1|0|U|969, 1OND|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4207

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1OND|1|0|A|966
1OND|1|0|G|967
1OND|1|0|C|968
1OND|1|0|U|969
1OND|1|0|A|970
1OND|1|0|A|971
1OND|1|0|C|972
1OND|1|0|U|973

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains