HL_1OND_032

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1OND|1|0|G|1338, 1OND|1|0|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2007

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1OND|1|0|G|1337
1OND|1|0|G|1338
1OND|1|0|U|1339
1OND|1|0|C|1340
1OND|1|0|G|1341
1OND|1|0|U|1342
1OND|1|0|C|1343

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22