HL_1OND_035

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

1OND|1|0|A|1468, 1OND|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_035 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.36

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1OND|1|0|C|1466
1OND|1|0|U|1467
1OND|1|0|A|1468
1OND|1|0|U|1469
1OND|1|0|G|1470
1OND|1|0|G|1471
1OND|1|0|C|1472
1OND|1|0|U|1473
1OND|1|0|A|1474
1OND|1|0|U|1475
1OND|1|0|G|1476

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains