HL_1OND_056

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1OND|1|0|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_056 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.2104

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1OND|1|0|C|2383
1OND|1|0|G|2384
1OND|1|0|U|2385
1OND|1|0|G|2386
1OND|1|0|U|2387
1OND|1|0|G|2388
1OND|1|0|G|2389
1OND|1|0|A|2390
1OND|1|0|A|2391
1OND|1|0|G|2392

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains