HL_1OND_079

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

1OND|1|0|U|1409, 1OND|1|0|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_079 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.3735

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1OND|1|0|G|1402
1OND|1|0|U|1403
1OND|1|0|C|1404
1OND|1|0|A|1405
1OND|1|0|A|1406
1OND|1|0|G|1407
1OND|1|0|A|1408
1OND|1|0|U|1409
1OND|1|0|U|1410
1OND|1|0|C|1411

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains