HL_1OSW_009

3D structure

PDB id

1OSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Stem of SL1 RNA in HIV-1: Structure and Nucleocapsid Protein Binding for a 1X3 Internal Loop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

1OSW|9|A|A|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OSW_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3089

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

1OSW|9|A|C|8
1OSW|9|A|U|9
1OSW|9|A|A|10
1OSW|9|A|C|11
1OSW|9|A|G|12
1OSW|9|A|G|13

Current chains

Chain A

5'-R(*GP*GP*AP*GP*GP*CP*GP*CP*UP*AP*CP*GP*GP*CP*GP*AP*GP*GP*CP*UP*CP*CP*A)-3'

Nearby chains