HL_1P6V_004

3D structure

PDB id

1P6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

1P6V|1|B|U|51, 1P6V|1|B|U|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

1P6V|1|B|G|45
1P6V|1|B|U|46
1P6V|1|B|U|47
1P6V|1|B|C|48
1P6V|1|B|G|49
1P6V|1|B|A|50
1P6V|1|B|U|51
1P6V|1|B|U|52
1P6V|1|B|C|53

Current chains

Chain B

45-MER

Nearby chains

Chain A

SsrA-binding protein