HL_1Q7Y_014

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCAUCGAC

Length

9 nucleotides

Bulged bases

1Q7Y|1|A|G|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_014 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.0514

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1Q7Y|1|A|G|416
1Q7Y|1|A|G|417
1Q7Y|1|A|C|418
1Q7Y|1|A|A|419
1Q7Y|1|A|U|420
1Q7Y|1|A|C|421
1Q7Y|1|A|G|422
1Q7Y|1|A|A|423
1Q7Y|1|A|C|424

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 4

50S ribosomal protein L44E

Chain M

50S ribosomal protein L15P

Chain N

L15 Ribosomal Protein