HL_1Q7Y_025

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

1Q7Y|1|A|A|874, 1Q7Y|1|A|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_025 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.0655

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

1Q7Y|1|A|U|872
1Q7Y|1|A|G|873
1Q7Y|1|A|A|874
1Q7Y|1|A|A|875
1Q7Y|1|A|A|876
1Q7Y|1|A|G|877
1Q7Y|1|A|G|878

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain C

50S ribosomal protein L2P