HL_1Q7Y_040

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_040 not in the Motif Atlas

Homologous match to HL_4V9F_040

Geometric discrepancy: 0.0606

The information below is about HL_4V9F_040

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

1Q7Y|1|A|G|1628
1Q7Y|1|A|G|1629
1Q7Y|1|A|A|1630
1Q7Y|1|A|A|1631
1Q7Y|1|A|A|1632
1Q7Y|1|A|C|1633

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain Q

50S ribosomal protein L19E