HL_1Q81_024

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1Q81|1|A|U|840, 1Q81|1|A|A|844, 1Q81|1|A|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0555

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1Q81|1|A|U|837
1Q81|1|A|C|838
1Q81|1|A|C|839
1Q81|1|A|U|840
1Q81|1|A|A|841
1Q81|1|A|C|842
1Q81|1|A|A|843
1Q81|1|A|A|844
1Q81|1|A|U|845
1Q81|1|A|A|846

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain D

50S ribosomal protein L3P

Chain S

50S ribosomal protein L22P