HL_1Q81_036

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAACUC

Length

7 nucleotides

Bulged bases

1Q81|1|A|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_036 not in the Motif Atlas

Homologous match to HL_4V9F_036

Geometric discrepancy: 0.0735

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1Q81|1|A|G|1468
1Q81|1|A|C|1469
1Q81|1|A|A|1470
1Q81|1|A|A|1471
1Q81|1|A|C|1472
1Q81|1|A|U|1473
1Q81|1|A|C|1474

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain N

L15 Ribosomal Protein