HL_1Q81_058

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_058 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.0691

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1Q81|1|A|U|2358
1Q81|1|A|G|2359
1Q81|1|A|C|2360
1Q81|1|A|A|2361
1Q81|1|A|A|2362
1Q81|1|A|G|2363
1Q81|1|A|A|2364
1Q81|1|A|G|2365

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain J

L10 Ribosomal Protein

Chain O

50S ribosomal protein L18P

Chain R

50S ribosomal protein L21e