HL_1Q82_035

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

GCUGAUC

Length

7 nucleotides

Bulged bases

1Q82|1|A|C|1431, 1Q82|1|A|U|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q82_035 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.0374

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1Q82|1|A|G|1430
1Q82|1|A|C|1431
1Q82|1|A|U|1432
1Q82|1|A|G|1433
1Q82|1|A|A|1434
1Q82|1|A|U|1435
1Q82|1|A|C|1436

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L39e

Chain Q

50S ribosomal protein L19E

Chain S

50S ribosomal protein L22P