HL_1Q82_049

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

1Q82|1|A|A|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q82_049 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0393

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1Q82|1|A|C|1916
1Q82|1|A|G|1917
1Q82|1|A|U|1918
1Q82|1|A|A|1919
1Q82|1|A|C|1920
1Q82|1|A|A|1921
1Q82|1|A|A|1922
1Q82|1|A|G|1923

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 4

50S ribosomal protein L44E