HL_1Q82_062

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

1Q82|1|A|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q82_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.127

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1Q82|1|A|A|2506
1Q82|1|A|G|2507
1Q82|1|A|C|2508
1Q82|1|A|A|2509
1Q82|1|A|C|2510
1Q82|1|A|A|2511
1Q82|1|A|U|2512
1Q82|1|A|A|2513
1Q82|1|A|U|2514

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain J

L10 Ribosomal Protein