HL_1Q86_026

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGAAG

Length

6 nucleotides

Bulged bases

1Q86|1|A|C|920, 1Q86|1|A|A|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_026 not in the Motif Atlas

Homologous match to HL_4V9F_026

Geometric discrepancy: 0.0392

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1Q86|1|A|U|919
1Q86|1|A|C|920
1Q86|1|A|G|921
1Q86|1|A|A|922
1Q86|1|A|A|923
1Q86|1|A|G|924

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 4

50S ribosomal protein L44E

Chain M

50S ribosomal protein L15P