HL_1Q86_029

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_029 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.0422

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|G|1076
1Q86|1|A|G|1077
1Q86|1|A|A|1078
1Q86|1|A|A|1079
1Q86|1|A|C|1080
1Q86|1|A|A|1081
1Q86|1|A|A|1082
1Q86|1|A|C|1083

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain X

50S ribosomal protein L30P

Chain Z

50S ribosomal protein L32E