HL_1Q86_035
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCUGAUC
- Length
- 7 nucleotides
- Bulged bases
- 1Q86|1|A|C|1431, 1Q86|1|A|U|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Q86_035 not in the Motif Atlas
- Homologous match to HL_4V9F_035
- Geometric discrepancy: 0.0491
- The information below is about HL_4V9F_035
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
1Q86|1|A|G|1430
1Q86|1|A|C|1431
1Q86|1|A|U|1432
1Q86|1|A|G|1433
1Q86|1|A|A|1434
1Q86|1|A|U|1435
1Q86|1|A|C|1436
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L39e
- Chain Q
- 50S ribosomal protein L19E
- Chain S
- 50S ribosomal protein L22P
Coloring options: