HL_1Q86_069
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUACAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 1Q86|1|A|U|2837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Q86_069 not in the Motif Atlas
- Homologous match to HL_4V9F_069
- Geometric discrepancy: 0.0402
- The information below is about HL_4V9F_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
1Q86|1|A|G|2836
1Q86|1|A|U|2837
1Q86|1|A|A|2838
1Q86|1|A|C|2839
1Q86|1|A|A|2840
1Q86|1|A|A|2841
1Q86|1|A|G|2842
1Q86|1|A|A|2843
1Q86|1|A|C|2844
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain S
- 50S ribosomal protein L22P
- Chain Y
- 50S ribosomal protein L31e
Coloring options: