HL_1Q8N_016

3D structure

PDB id

1Q8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the Malachite Green RNA Binding Aptamer

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q8N_016 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.3131

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1Q8N|16|A|C|14
1Q8N|16|A|G|15
1Q8N|16|A|A|16
1Q8N|16|A|G|17
1Q8N|16|A|A|18
1Q8N|16|A|G|19

Current chains

Chain A

RNA Aptamer

Nearby chains